CAFE
Computational Analysis of gene Family Evolution
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File List
Here is a list of all files with brief descriptions:
[detail level 12]
o-cafe
|o*branch_cutting.cpp
|o*branch_cutting.h
|o*cafe.h
|o*cafe_commands.cpp
|o*cafe_commands.h
|o*cafe_family.c
|o*cafe_main.c
|o*cafe_report.c
|o*cafe_shell.cFunctions corresponding to the commands available in Cafe
|o*cafe_shell.h
|o*cafe_tree.c
|o*caferror.py
|o*conditional_distribution.cpp
|o*conditional_distribution.h
|o*cross_validator.cpp
|o*cross_validator.h
|o*error_model.cpp
|o*error_model.h
|o*gene_family.cpp
|o*gene_family.h
|o*Globals.cpp
|o*Globals.h
|o*lambda.cpp
|o*lambda.h
|o*lambdamu.cpp
|o*lambdamu.h
|o*likelihood_ratio.cpp
|o*likelihood_ratio.h
|o*log_buffer.cpp
|o*log_buffer.h
|o*pvalue.cpp
|o*pvalue.h
|o*reports.cpp
|o*reports.h
|o*simerror.cpp
|o*simerror.h
|o*viterbi.cpp
|\*viterbi.h
o-libcommon
|o*fminsearch.cpp
|o*gmatrix.c
|o*gmatrix.h
|o*grpcmp.c
|o*hashtable.cSimple hash table implementation
|o*hashtable.hSimple hash table implementation
|o*histogram.c
|o*mathfunc.c
|o*mathfunc.h
|o*matrix_exponential.c
|o*matrix_exponential.h
|o*memalloc.c
|o*memalloc.h
|o*regexpress.c
|o*regexpress.h
|o*utils.c
|o*utils.h
|o*utils_string.c
|\*utils_string.h
o-libtree
|o*birthdeath.c
|o*birthdeath.h
|o*chooseln_cache.c
|o*chooseln_cache.h
|o*family.h
|o*input_values.c
|o*input_values.h
|o*phylogeny.c
|o*svg.c
|o*tree.c
|\*tree.h
o-tests
|o*command_tests.cpp
|o*error_model_tests.cpp
|o*family_tests.cpp
|o*lambda_tests.cpp
|o*report_tests.cpp
|\*test.cpp
o*config.h
o*main.cpp
o*mcl2rawcafe.py
\*conf.py