lambdamu.cpp File Reference

#include <vector>
#include <sstream>
#include <iterator>
#include <algorithm>
#include <cmath>
#include <iostream>
#include "lambdamu.h"
#include "Globals.h"
#include "cafe_commands.h"
#include "lambda.h"
#include "log_buffer.h"
#include "gene_family.h"
#include "cafe.h"

Functions
void	cafe_shell_set_lambda_mu (pCafeParam param, double *parameters)
void	lambdamu_prepare_search (pCafeParam param, lambdamu_args &params)
void	lambdamu_set (pCafeParam param, lambdamu_args &params)
int	cafe_cmd_lambdamu (Globals &globals, std::vector< std::string > tokens)
double	cafe_cluster_lambda_mu_search (double *parameters, void *args)
double	cafe_best_lambda_mu_search (double *parameters, void *args)
void	best_lambda_mu_by_fminsearch (pCafeParam param, int lambda_len, int mu_len, int k, ostream &log)

Variables
pCafeParam	cafe_param
	Holds the global program state that user commands act on. More...

Function Documentation

void best_lambda_mu_by_fminsearch	(	pCafeParam	param,
		int	lambda_len,
		int	mu_len,
		int	k,
		ostream &	log
	)

double cafe_best_lambda_mu_search	(	double *	parameters,
		void *	args
	)

double cafe_cluster_lambda_mu_search	(	double *	parameters,
		void *	args
	)

int cafe_cmd_lambdamu	(	Globals &	globals,
		std::vector< std::string >	tokens
	)

void cafe_shell_set_lambda_mu	(	pCafeParam	param,
		double *	parameters
	)

void lambdamu_prepare_search	(	pCafeParam	param,
		lambdamu_args &	params
	)

void lambdamu_set	(	pCafeParam	param,
		lambdamu_args &	params
	)

Variable Documentation

pCafeParam cafe_param

Holds the global program state that user commands act on.