pvalue.cpp File Reference

#include <istream>
#include <ostream>
#include <sstream>
#include <iostream>
#include <iomanip>
#include <vector>
#include <string>
#include <algorithm>
#include "pvalue.h"
#include "conditional_distribution.h"

Functions
void	check_cache_and_compute_likelihoods (pCafeTree pTree, int max, pBirthDeathCacheArray cache)
void	print_pvalues (std::ostream &ost, pCafeTree pcafe, int max, int num_random_samples, pBirthDeathCacheArray cache)
void	write_pvalues (std::ostream &ost, pArrayList values, int count)
void	read_pvalues (std::istream &ist, int count)
void	pvalues_for_family (pCafeTree pTree, pCafeFamily family, family_size_range *range, int numthreads, int num_random_samples, int index)
void	cafe_tree_p_values (pCafeTree pcafe, std::vector< double > &pvalues, std::vector< std::vector< double > > &pconddist, int cdlen)

Function Documentation

void cafe_tree_p_values	(	pCafeTree	pcafe,
		std::vector< double > &	pvalues,
		std::vector< std::vector< double > > &	pconddist,
		int	cdlen
	)

void check_cache_and_compute_likelihoods	(	pCafeTree	pTree,
		int	max,
		pBirthDeathCacheArray	cache
	)

void print_pvalues	(	std::ostream &	ost,
		pCafeTree	pcafe,
		int	max,
		int	num_random_samples,
		pBirthDeathCacheArray	cache
	)

void pvalues_for_family	(	pCafeTree	pTree,
		pCafeFamily	family,
		family_size_range *	range,
		int	numthreads,
		int	num_random_samples,
		int	index
	)

void read_pvalues	(	std::istream &	ist,
		int	count
	)

void write_pvalues	(	std::ostream &	ost,
		pArrayList	values,
		int	count
	)