branch_cutting.cpp File Reference

#include <sstream>
#include <utility>
#include <algorithm>
#include <iostream>
#include "branch_cutting.h"
#include "conditional_distribution.h"
#include "viterbi.h"
#include "Globals.h"
#include "pvalue.h"
#include <family.h>
#include "cafe.h"

Data Structures
struct	BranchCuttingParam

Typedefs
typedef BranchCuttingParam *	pBranchCuttingParam

Functions
double **	p_values_of_two_trees (pCafeTree pcafe1, pCafeTree pcafe2, double **pvalues, const std::pair< matrix, matrix > &cond_dist, int cdlen)
void	set_size_for_split (pCafeFamily pcf, int idx, pCafeTree pcafe)
pArrayList	to_arraylist (matrix &v)
void	compute_cutpvalues (pCafeTree pparamcafe, pCafeFamily family, int num_random_samples, int b, int range_start, int range_stop, viterbi_parameters &viterbi, double pvalue, std::vector< double > &p1, double **p2, CutBranch &cb)
void *	__cafe_branch_cutting_thread_func (void *ptr)
std::ostream &	operator<< (std::ostream &os, CafeTree &tree)
void	cut_branch (CutBranch &cb, pTree ptree, pCafeTree paramCafe, family_size_range &range, int num_threads, int num_random_samples, int b, std::ostream &ost)
void	cafe_branch_cutting (Globals &globals, viterbi_parameters &viterbi)

Typedef Documentation

typedef BranchCuttingParam* pBranchCuttingParam

Function Documentation

void* __cafe_branch_cutting_thread_func

(

void *

ptr

)

void cafe_branch_cutting	(	Globals &	globals,
		viterbi_parameters &	viterbi
	)

void compute_cutpvalues	(	pCafeTree	pparamcafe,
		pCafeFamily	family,
		int	num_random_samples,
		int	b,
		int	range_start,
		int	range_stop,
		viterbi_parameters &	viterbi,
		double	pvalue,
		std::vector< double > &	p1,
		double **	p2,
		CutBranch &	cb
	)

void cut_branch	(	CutBranch &	cb,
		pTree	ptree,
		pCafeTree	paramCafe,
		family_size_range &	range,
		int	num_threads,
		int	num_random_samples,
		int	b,
		std::ostream &	ost
	)

std::ostream& operator<<	(	std::ostream &	os,
		CafeTree &	tree
	)

double** p_values_of_two_trees	(	pCafeTree	pcafe1,
		pCafeTree	pcafe2,
		double **	pvalues,
		const std::pair< matrix, matrix > &	cond_dist,
		int	cdlen
	)

void set_size_for_split	(	pCafeFamily	pcf,
		int	idx,
		pCafeTree	pcafe
	)

pArrayList to_arraylist

(

matrix &

v

)