family_tests.cpp File Reference

#include <sstream>
#include <fstream>
#include "gene_family.h"
#include "viterbi.h"
#include "cafe_commands.h"
#include <utils_string.h>
#include <cafe_shell.h>
#include <tree.h>
#include <cafe.h>
#include "CppUTest/TestHarness.h"

Functions
pCafeFamilyItem	get_family_item (pCafeFamily pcf, const char *szid)
	TEST_GROUP (FamilyTests)
	TEST (FamilyTests, TestCafeFamily)
	TEST (FamilyTests, load_gene_families_tab_separated)
	TEST (FamilyTests, filter_families_greater_than_max_size)
	TEST (FamilyTests, load_gene_families_comma_separated)
	TEST (FamilyTests, load_gene_families_is_not_whitespace_separated)
	TEST (FamilyTests, cafe_family_set_size)
	TEST (FamilyTests, cafe_family_init)
	TEST (FamilyTests, cafe_family_add_item)
	TEST (FamilyTests, cafe_family_set_species_index)
	TEST (FamilyTests, cafe_family_set_size_with_family_forced)
	TEST (FamilyTests, write_family_gainloss)
	TEST (FamilyTests, write_family)
	TEST (FamilyTests, log_cluster_membership)

Function Documentation

pCafeFamilyItem get_family_item	(	pCafeFamily	pcf,
		const char *	szid
	)

TEST	(	FamilyTests	,
		TestCafeFamily
	)

TEST	(	FamilyTests	,
		load_gene_families_tab_separated
	)

TEST	(	FamilyTests	,
		filter_families_greater_than_max_size
	)

TEST	(	FamilyTests	,
		load_gene_families_comma_separated
	)

TEST	(	FamilyTests	,
		load_gene_families_is_not_whitespace_separated
	)

TEST	(	FamilyTests	,
		cafe_family_set_size
	)

TEST	(	FamilyTests	,
		cafe_family_init
	)

TEST	(	FamilyTests	,
		cafe_family_add_item
	)

TEST	(	FamilyTests	,
		cafe_family_set_species_index
	)

TEST	(	FamilyTests	,
		cafe_family_set_size_with_family_forced
	)

TEST	(	FamilyTests	,
		write_family_gainloss
	)

TEST	(	FamilyTests	,
		write_family
	)

TEST	(	FamilyTests	,
		log_cluster_membership
	)

TEST_GROUP

(

FamilyTests

)