likelihood_ratio.h File Reference

#include <vector>
#include <family.h>

Go to the source code of this file.

Functions
void	cafe_lhr_for_diff_lambdas (pCafeParam param, pTree lambda_tree2, int num_lambdas, OPTIMIZER_INIT_TYPE lfunc)
void	update_branchlength (pCafeTree pcafe, pTree lambda_tree, double bl_augment, int *old_branchlength, int *t)
void	likelihood_ratio_report (pCafeFamily pfamily, pCafeTree pcafe, const std::vector< double > &pvalues, const std::vector< int > &plambda, const std::vector< double * > &lambda_cache, FILE *fout)

Function Documentation

void cafe_lhr_for_diff_lambdas	(	pCafeParam	param,
		pTree	lambda_tree2,
		int	num_lambdas,
		OPTIMIZER_INIT_TYPE	lfunc
	)

void likelihood_ratio_report	(	pCafeFamily	pfamily,
		pCafeTree	pcafe,
		const std::vector< double > &	pvalues,
		const std::vector< int > &	plambda,
		const std::vector< double * > &	lambda_cache,
		FILE *	fout
	)

void update_branchlength	(	pCafeTree	pcafe,
		pTree	lambda_tree,
		double	bl_augment,
		int *	old_branchlength,
		int *	t
	)