CAFE
Computational Analysis of gene Family Evolution
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simerror.h
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1 #ifndef SIMERROR_H_64CD5F45_CBC7_4A50_868F_6DF76C7E4A31
2 #define SIMERROR_H_64CD5F45_CBC7_4A50_868F_6DF76C7E4A31
3 
4 #include <string>
5 #include <iosfwd>
6 
7 extern "C" {
8 #include "cafe.h"
9 }
10 
11 void simulate_misclassification(pCafeFamily pcf);
12 double simerror(pCafeFamily pcf, std::string prefix, int repeat);
13 size_t get_random(std::vector<double> misclassification_probability);
14 void write_species_counts(pCafeFamily pcf, std::ostream& ost);
15 
16 #endif
simerror
double simerror(pCafeFamily pcf, std::string prefix, int repeat)
Definition: simerror.cpp:128
simulate_misclassification
void simulate_misclassification(pCafeFamily pcf)
Definition: simerror.cpp:85
get_random
size_t get_random(std::vector< double > misclassification_probability)
Definition: simerror.cpp:46
write_species_counts
void write_species_counts(pCafeFamily pcf, std::ostream &ost)
Definition: simerror.cpp:67
CafeFamily
Structure representing a matrix of values of family sizes.
Definition: family.h:88