report_tests.cpp File Reference

#include <vector>
#include <sstream>
#include <iostream>
#include <reports.h>
#include <Globals.h>
#include <gene_family.h>
#include "CppUTest/TestHarness.h"
#include "CppUTest/CommandLineTestRunner.h"
#include <cafe.h>

Functions
	TEST_GROUP (ReportTests)
	TEST (ReportTests, get_report_parameters)
	TEST (ReportTests, write_report)
Report	create_report ()
	TEST (ReportTests, write_html_report)
	TEST (ReportTests, write_json_report)
	TEST (ReportTests, write_viterbi)
	TEST (ReportTests, write_families_header)
	TEST (ReportTests, write_families_line)
	TEST (ReportTests, family_line_item_sets_pvalues)
	TEST (ReportTests, draw_ascii_tree)
	TEST (ReportTests, draw_svg)
	TEST (ReportTests, draw_svg_puts_internal_node_ids)
	TEST (ReportTests, depth)

Variables
pBirthDeathCacheArray	probability_cache

Function Documentation

Report create_report

(

)

TEST	(	ReportTests	,
		get_report_parameters
	)

TEST	(	ReportTests	,
		write_report
	)

TEST	(	ReportTests	,
		write_html_report
	)

TEST	(	ReportTests	,
		write_json_report
	)

TEST	(	ReportTests	,
		write_viterbi
	)

TEST	(	ReportTests	,
		write_families_header
	)

TEST	(	ReportTests	,
		write_families_line
	)

TEST	(	ReportTests	,
		family_line_item_sets_pvalues
	)

TEST	(	ReportTests	,
		draw_ascii_tree
	)

TEST	(	ReportTests	,
		draw_svg
	)

TEST	(	ReportTests	,
		draw_svg_puts_internal_node_ids
	)

TEST	(	ReportTests	,
		depth
	)

TEST_GROUP

(

ReportTests

)

Variable Documentation

pBirthDeathCacheArray probability_cache

The variable cafe_param is a global singleton that holds general program state. cafe_param holds pcafe, a CafeTree, and pfamily, a CafeFamily . These are set by the user via the commands "tree" and "load" respectively. When the user calls the command "lambda" calculations are performed on the pcafe and pfamily variables.