CafeNode Struct Reference

#include <family.h>

Data Fields
PhylogenyNode	super
double **	k_likelihoods
double *	likelihoods
int *	viterbi
int	familysize
struct probabilities	birth_death_probabilities
struct square_matrix *	birthdeath_matrix
pArrayList	k_bd
pErrorStruct	errormodel

Detailed Description

Struct that holds information about a node in a CafeTree. It extends the PhylogenyNode structure which in turn extends the TreeNode structure.

Field Documentation

struct probabilities CafeNode::birth_death_probabilities

struct square_matrix* CafeNode::birthdeath_matrix

Matrix of precalculated values, indexed by the root family size and the family size

pErrorStruct CafeNode::errormodel

int CafeNode::familysize

Value representing the size of a single gene family for the species or node Temporary value since CAFE holds in memory counts for many gene families for each node

pArrayList CafeNode::k_bd

double** CafeNode::k_likelihoods

double* CafeNode::likelihoods

PhylogenyNode CafeNode::super

int* CafeNode::viterbi

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The documentation for this struct was generated from the following file:

• /mnt/c/Users/befulton/Documents/GIT/CAFE/libtree/family.h