This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 12]

Argument
ArrayList
BirthDeathCacheArray	A cache of values of family size transition probabilities
BirthDeathCacheKey
BranchCuttingParam
CafeFamily	Structure representing a matrix of values of family sizes
CafeFamilyItem	Represents a single gene family and the number of members of that family that exist in each species
CafeNode
CafeTree
CDParam
change
chooseln_cache	A cache of values of chooseln
ConditionalDistribution
coord
cross_validator
ctype
my_ctype
CutBranch
ErrorMeasure
errormodel_args
ErrorStruct
esterror_args
family_args
family_line_item
family_size_range
FMinSearch
gene_family
Globals
GMatrix
hash_table	Identifies the hashtable for which operations are to be performed
hash_table_element	Stores an hash table element for use in the hash table
input_values
lambda_arg_base
lambda_args
lambdamu_args
lambda_range
lhtest_args
load_args
LRT2LParam
LRTParam
PnodeParam
poisson_lambda
posterior
probabilities
pvalue_args
Report
report_parameters
roots
runtime_error
io_error
square_matrix
streambuf
log_buffer
String
tagANOVA
tagANOVAResultElement
tagCafeParam	Singleton structure that holds all of the global data that Cafe acts on
tagHistogram
tagLinkedListItem
tagMetapostConfig
tagPhylogenyNode
tagTree
tagTreeNode
tagVector
to_lower
tree_visualization
ascii_visualization
newick_visualization
svg_visualization
viterbi_args
viterbi_parameters
ViterbiParam